Build up the node title

Source: R/gs_Graph.R

Build up the title for the graph nodes to display the available information of each geneset.

getGraphTitle(geneset_df = NULL, node_ids, gs_ids, gs_names = NULL)

Arguments

geneset_df

A data.frame of genesets with a column Genesets containing geneset identifiers and a column Genes containing the genes belonging to each geneset

node_ids

vector, a vector of ids of the nodes in the graph for which the node title should be build.

gs_ids

vector, a vector of geneset identifiers, e.g. the Genesets column of geneset_df.

gs_names

vector, a vector of geneset descriptions/names, e.g. the Term / Description column of geneset_df.

Value

A list of titles for a graph with nodes given by node_ids.

Examples

genes <- list(
  c("PDHB", "VARS2"), c("IARS2", "PDHA1"),
  c("AAAS", "ABCE1"), c("ABI1", "AAR2"), c("AATF", "AMFR"),
  c("BMS1", "DAP3"), c("AURKAIP1", "CHCHD1"), c("IARS2"),
  c("AHI1", "ALMS1")
)
gs_names <- c("a", "b", "c", "d", "e", "f", "g", "h", "i")
geneset_df <- data.frame(
  Genesets = gs_names,
  value = rep(1, 9)
)
geneset_df$Genes <- genes
graph <- getGraphTitle(
  geneset_df = geneset_df,
  node_ids = c(1:9),
  gs_ids = c(1:9),
  gs_names = gs_names
)