Check for subset inclusion

Remove subsets from a given list of sets, i.e. remove sets which are completely contained in any other larger set in the list.

checkInclusion(seeds)

Arguments

seeds

A list of sets

Value

A list of unique sets

Examples

## Mock example showing how the data should look like

seeds <- list(c(1:5), c(2:5), c(6:10))
s <- checkInclusion(seeds)

## Example using the data available in the package
data(scores_macrophage_topGO_example_small,
     package = "GeDi",
     envir = environment())

seeds <- seedFinding(scores_macrophage_topGO_example_small,
                     simThreshold = 0.3,
                     memThreshold = 0.5)
seeds <- checkInclusion(seeds)